Stem-loop nbr-mir-200a

Accession

MI0034367

Description

Neolamprologus brichardi nbr-mir-200a precursor miRNA

Literature search

1 open access papers mention nbr-mir-200a
(4 sentences)

Sequence

57635 reads, 3036.0 reads per million, 7 experiments

CAUCUUACCUGACAGUGCUGGAcuguacuacuguuguucUAACACUGUCUGGUAACGAUGUU
(((((((((.(((((((.((((....((....))...)))).))))))).))))).))))..

Structure

--    -     U       C    cugu  u 
  CAUC UUACC GACAGUG UGGA    ac a
  |||| ||||| ||||||| ||||    ||  
  GUAG AAUGG CUGUCAC AUcu    ug c
UU    C     U       A    -ugu  u 

Annotation confidence High

Genome context

JH422281.1: 3416420-3416481 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-200a

Mature nbr-miR-200a-5p

• Accession: MIMAT0060160
• Description: Neolamprologus brichardi nbr-miR-200a-5p mature miRNA
• Sequence: 1 - CAUCUUACCUGACAGUGCUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-200a-3p

• Accession: MIMAT0042524
• Description: Neolamprologus brichardi nbr-miR-200a-3p mature miRNA
• Sequence: 40 - UAACACUGUCUGGUAACGAUGUU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381