Stem-loop nbr-mir-144

Accession

MI0034368

Description

Neolamprologus brichardi nbr-mir-144 precursor miRNA

Sequence

1426 reads, 87.0 reads per million, 7 experiments

GGAUAUCAUCUUAUACUGUAAGUuuauaaaagagacaCUACAGUAUAGAUGAUGUACU
..(((((((((.((((((((.((((.......))))..)))))))))))))))))...

Structure

-GG         U        -A    au 
   AUAUCAUCU AUACUGUA  GUuu  a
   ||||||||| ||||||||  ||||  a
   UGUAGUAGA UAUGACAU  caga  a
UCA         -        Ca    ga 

Annotation confidence High

Genome context

JH422337.1: 3088790-3088847 [-]

Mature nbr-miR-144-5p

• Accession: MIMAT0042525
• Description: Neolamprologus brichardi nbr-miR-144-5p mature miRNA
• Sequence: 1 - GGAUAUCAUCUUAUACUGUAAGU - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-144-3p

• Accession: MIMAT0060161
• Description: Neolamprologus brichardi nbr-miR-144-3p mature miRNA
• Sequence: 38 - CUACAGUAUAGAUGAUGUACU - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381