Stem-loop nbr-mir-96-2

Accession

MI0034374

Description

Neolamprologus brichardi nbr-mir-96-2 precursor miRNA

Sequence

1413 reads, 87.0 reads per million, 7 experiments

UUUGGCACUAGCACAUUUUUGCUuuguuucuccucuuuugagCAAUCAUGUGUGGUGCCAAUAU
.(((((((((.(((((..((((((...............))))))..))))))))))))))...

Structure

--U         G     UU      uguuuc 
   UUGGCACUA CACAU  UUGCUu      u
   ||||||||| |||||  ||||||      c
   AACCGUGGU GUGUA  AACgag      c
UAU         -     CU      uuuucu 

Annotation confidence Not enough data

Genome context

JH422288.1: 6536973-6537036 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-96-2

Mature nbr-miR-96-5p

• Accession: MIMAT0042528
• Description: Neolamprologus brichardi nbr-miR-96-5p mature miRNA
• Sequence: 1 - UUUGGCACUAGCACAUUUUUGCU - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-96-2-3p

• Accession: MIMAT0060165
• Description: Neolamprologus brichardi nbr-miR-96-2-3p mature miRNA
• Sequence: 43 - CAAUCAUGUGUGGUGCCAAUAU - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381