Stem-loop nbr-mir-27a

Accession

MI0034375

Description

Neolamprologus brichardi nbr-mir-27a precursor miRNA

Sequence

17543 reads, 996.0 reads per million, 7 experiments

AGGACUUAGCUCGCUCCGUGAACAguucagugaaguccugugUUCACAGUGGCUAAGUUCCGC
.(((((((((.((((..(((((((...(((.(....))))))))))))))))))))))))...

Structure

--A         U    CC       guu   u a 
   GGACUUAGC CGCU  GUGAACA   cag g a
   ||||||||| ||||  |||||||   ||| |  
   CUUGAAUCG GUGA  CACUUgu   guc c g
CGC         -    --       ---   - u 

Annotation confidence High

Genome context

JH422296.1: 728790-728852 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-27a

Mature nbr-miR-27a-5p

• Accession: MIMAT0060169
• Description: Neolamprologus brichardi nbr-miR-27a-5p mature miRNA
• Sequence: 1 - AGGACUUAGCUCGCUCCGUGAACA - 24
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-27a-3p

• Accession: MIMAT0042530
• Description: Neolamprologus brichardi nbr-miR-27a-3p mature miRNA
• Sequence: 43 - UUCACAGUGGCUAAGUUCCGC - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381