Stem-loop nbr-mir-194a

Accession

MI0034380

Description

Neolamprologus brichardi nbr-mir-194a precursor miRNA

Sequence

1924 reads, 115.0 reads per million, 7 experiments

UGUAACAGCAACUCCAUGUGGAagcugugucaguuCCAGUGGAGGUGCUGUUACUUG
.(((((((((.((((((.(((((.(((...)))))))))))))).)))))))))...

Structure

--U         A      G     g   u 
   GUAACAGCA CUCCAU UGGAa cug  
   ||||||||| |||||| ||||| ||| g
   CAUUGUCGU GAGGUG ACCuu gac  
GUU         G      -     -   u 

Annotation confidence High

Genome context

JH422337.1: 670446-670502 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-194a

Mature nbr-miR-194a-5p

• Accession: MIMAT0042534
• Description: Neolamprologus brichardi nbr-miR-194a-5p mature miRNA
• Sequence: 1 - UGUAACAGCAACUCCAUGUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-194a-3p

• Accession: MIMAT0060172
• Description: Neolamprologus brichardi nbr-miR-194a-3p mature miRNA
• Sequence: 36 - CCAGUGGAGGUGCUGUUACUUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381