Stem-loop nbr-mir-23b

Accession

MI0034381

Description

Neolamprologus brichardi nbr-mir-23b precursor miRNA

Sequence

9584 reads, 577.0 reads per million, 7 experiments

aGGGUUCCUGGCGUGCUGAUUUgugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
..(((((((((((((.((((((.............)))))))).)))))))))))...

Structure

-aG           -  C      gugac 
   GGUUCCUGGCG UG UGAUUU     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu 

Annotation confidence High

Genome context

JH422289.1: 3781154-3781211 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-23b

Mature nbr-miR-23b-5p

• Accession: MIMAT0060173
• Description: Neolamprologus brichardi nbr-miR-23b-5p mature miRNA
• Sequence: 2 - GGGUUCCUGGCGUGCUGAUUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-23b-3p

• Accession: MIMAT0042535
• Description: Neolamprologus brichardi nbr-miR-23b-3p mature miRNA
• Sequence: 38 - AUCACAUUGCCAGGGAUUACC - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381