Stem-loop nbr-mir-107

Accession

MI0034382

Description

Neolamprologus brichardi nbr-mir-107 precursor miRNA

Literature search

1 open access papers mention nbr-mir-107
(1 sentences)

Sequence

6699 reads, 401.0 reads per million, 7 experiments

AGCUUCUUUACAGUGUUGCCUUGuggcauggcgaucaAGCAGCAUUGUACAGGGCUAUC
((((.((.(((((((((((.((((.((...)).).)))))))))))))).))))))...

Structure

---    U  U           C   - g  a 
   AGCU CU UACAGUGUUGC UUG u gc  
   |||| || ||||||||||| ||| | || u
   UCGG GA AUGUUACGACG Aac a cg  
CUA    -  C           -   u g  g 

Annotation confidence High

Genome context

JH422278.1: 7119431-7119489 [+]

Mature nbr-miR-107-5p

• Accession: MIMAT0060174
• Description: Neolamprologus brichardi nbr-miR-107-5p mature miRNA
• Sequence: 1 - AGCUUCUUUACAGUGUUGCCUUG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-107-3p

• Accession: MIMAT0042536
• Description: Neolamprologus brichardi nbr-miR-107-3p mature miRNA
• Sequence: 38 - AGCAGCAUUGUACAGGGCUAUC - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381