miRBase entry: nbr-mir-18a

Stem-loop nbr-mir-18a

Accession

MI0034383

Description

Neolamprologus brichardi nbr-mir-18a precursor miRNA

Sequence

UAAGGUGCAUCUAGUGCAGAUAgugaaguagacuagcaccuacugcccuaagugcuccuucug
.((((.((((.(((.((((.(((((...........)).))))))).))).)))).))))...

Structure

--U    U    C   U    A   -  aagu 
   AAGG GCAU UAG GCAG UAg ug    a
   |||| |||| ||| |||| ||| ||    g
   uucc cgug auc cguc auc ac    a
guc    u    a   c    -   c  gauc

Annotation confidence Not enough data

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Genome context

JH422286.1: 6064120-6064182 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from nbr-mir-18a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-18a

Accession	MIMAT0042537
Description	Neolamprologus brichardi nbr-miR-18a mature miRNA
Sequence	1 - UAAGGUGCAUCUAGUGCAGAUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381