Stem-loop nbr-mir-20a-1

Accession

MI0034385

Description

Neolamprologus brichardi nbr-mir-20a-1 precursor miRNA

Sequence

5642 reads, 322.0 reads per million, 7 experiments

UAAAGUGCUUAUAGUGCAGGUAGuguuuugcacaaucuACUGCAAUGUAAGCACUUGAAGU
..(((((((((((.(((((...((((...))))......))))).))))))))))).....

Structure

---UA           G     ---GUA    u 
     AAGUGCUUAUA UGCAG      Gugu  
     ||||||||||| |||||      |||| u
     UUCACGAAUGU ACGUC      cacg  
UGAAG           A     Aucuaa    u 

Annotation confidence High

Genome context

JH422273.1: 20860170-20860230 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from nbr-mir-20a-1

Mature nbr-miR-20a-5p

• Accession: MIMAT0042539
• Description: Neolamprologus brichardi nbr-miR-20a-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-20a-1-3p

• Accession: MIMAT0060176
• Description: Neolamprologus brichardi nbr-miR-20a-1-3p mature miRNA
• Sequence: 39 - ACUGCAAUGUAAGCACUUGAAGU - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381