Stem-loop nbr-mir-460

Accession

MI0034388

Description

Neolamprologus brichardi nbr-mir-460 precursor miRNA

Sequence

795 reads, 50.0 reads per million, 7 experiments

CCUGCAUUGUACACACUGUGcguauaaaugucauaagCACAGCGCAUACAAUGUGGAUG
.((((((((((..(.((((((.(((.......))).)))))).)..))))))))))...

Structure

--C          CA A      g   aa 
   CUGCAUUGUA  C CUGUGc uau  a
   ||||||||||  | |||||| |||  u
   GGUGUAACAU  G GACACg aua  g
GUA          AC C      a   cu 

Annotation confidence High

Genome context

JH422296.1: 50007-50065 [-]

Mature nbr-miR-460-5p

• Accession: MIMAT0060178
• Description: Neolamprologus brichardi nbr-miR-460-5p mature miRNA
• Sequence: 1 - CCUGCAUUGUACACACUGUG - 20
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-460-3p

• Accession: MIMAT0042541
• Description: Neolamprologus brichardi nbr-miR-460-3p mature miRNA
• Sequence: 38 - CACAGCGCAUACAAUGUGGAUG - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381