miRBase entry: nbr-mir-23a-2

Stem-loop nbr-mir-23a-2


Accession
MI0034389
Description
Neolamprologus brichardi nbr-mir-23a-2 precursor miRNA


Sequence

3690 reads, 213.0 reads per million, 7 experiments
GGGUUCCUGGCACCGUGAUUUgaugcacaaagagaaacaaaaAUCACAUUGCCAGGGAUUUCCA
((((((((((((..(((((((...................)))))))..))))))))))..)).

Structure
-  --          CC       gaugcaca 
 GG  GUUCCUGGCA  GUGAUUU        a
 ||  ||||||||||  |||||||        a
 CC  UAGGGACCGU  CACUAaa        g
A  UU          UA       aacaaaga 


Annotation confidence Not enough data
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Genome context
JH422373.1: 1150451-1150514 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nbr-mir-23a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-23a-2-5p

Accession MIMAT0060209
Description Neolamprologus brichardi nbr-miR-23a-2-5p mature miRNA
Sequence 1 - GGGUUCCUGGCACCGUGAUUU - 21
Evidence experimental
Illumina [1]

Mature nbr-miR-23a-3p

Accession MIMAT0042542
Description Neolamprologus brichardi nbr-miR-23a-3p mature miRNA
Sequence 43 - AUCACAUUGCCAGGGAUUUCCA - 64
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381