Stem-loop nbr-mir-20a-2

Accession

MI0034391

Description

Neolamprologus brichardi nbr-mir-20a-2 precursor miRNA

Sequence

5202 reads, 294.0 reads per million, 7 experiments

UAAAGUGCUUAUAGUGCAGGUAGucuuauuacuguuuaaauucuACUGCAAUGUGAGCACUUCAAGU
..(((((((((((.(((((.(((..(((........)))...)))))))).))))))))))).....

Structure

---UA           G     G   -uc   uua 
     AAGUGCUUAUA UGCAG UAG   uua   c
     ||||||||||| ||||| |||   |||    
     UUCACGAGUGU ACGUC Auc   aau   u
UGAAC           A     -   uua   uug 

Annotation confidence High

Genome context

JH422286.1: 6064481-6064547 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from nbr-mir-20a-2

Mature nbr-miR-20a-5p

• Accession: MIMAT0042539
• Description: Neolamprologus brichardi nbr-miR-20a-5p mature miRNA
• Sequence: 1 - UAAAGUGCUUAUAGUGCAGGUAG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-20a-2-3p

• Accession: MIMAT0060177
• Description: Neolamprologus brichardi nbr-miR-20a-2-3p mature miRNA
• Sequence: 45 - ACUGCAAUGUGAGCACUUCAAGU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381