Stem-loop nbr-mir-338-3

Accession

MI0034394

Description

Neolamprologus brichardi nbr-mir-338-3 precursor miRNA

Sequence

1877 reads, 113.0 reads per million, 7 experiments

AACAAUAUCCUGGUGCUGCCUGAGUgcucccuaaagacUCCAGCAUCAGUGAUUUUGUUG
(((((.((((((((((((...((((.((......))))))))))))))).))).))))).

Structure

-     U   -         CCU    g  cc 
 AACAA AUC CUGGUGCUG   GAGU cu  c
 ||||| ||| |||||||||   |||| ||   
 UUGUU UAG GACUACGAC   CUca ga  u
G     U   U         ---    -  aa 

Annotation confidence High

Genome context

JH422300.1: 3696405-3696464 [+]

Mature nbr-miR-338-3-5p

• Accession: MIMAT0060181
• Description: Neolamprologus brichardi nbr-miR-338-3-5p mature miRNA
• Sequence: 1 - AACAAUAUCCUGGUGCUGCCUGAGU - 25
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-338-3p

• Accession: MIMAT0042544
• Description: Neolamprologus brichardi nbr-miR-338-3p mature miRNA
• Sequence: 39 - UCCAGCAUCAGUGAUUUUGUUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381