Stem-loop nbr-mir-129-4

Accession

MI0034402

Description

Neolamprologus brichardi nbr-mir-129-4 precursor miRNA

Sequence

39474 reads, 2111.0 reads per million, 7 experiments

CUUUUUGCGGUCUGGGCUUGCuguuccuaaggcaguagccaggAAGCCCUUACCCCAAAAAGuau
(((((((.(((..((((((.(((...(((......))).))).))))))..))).)))))))...

Structure

---       C   CU      G   uuc   ag 
   CUUUUUG GGU  GGGCUU Cug   cua  g
   ||||||| |||  |||||| |||   |||   
   GAAAAAC CCA  CCCGAA gac   gau  c
uau       C   UU      g   --c   ga 

Annotation confidence High

Genome context

JH422274.1: 9408306-9408370 [+]

Mature nbr-miR-129-5p

• Accession: MIMAT0042546
• Description: Neolamprologus brichardi nbr-miR-129-5p mature miRNA
• Sequence: 1 - CUUUUUGCGGUCUGGGCUUGC - 21
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-129-4-3p

• Accession: MIMAT0060183
• Description: Neolamprologus brichardi nbr-miR-129-4-3p mature miRNA
• Sequence: 44 - AAGCCCUUACCCCAAAAAG - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381