Stem-loop nbr-mir-196a-1

Accession

MI0034405

Description

Neolamprologus brichardi nbr-mir-196a-1 precursor miRNA

Sequence

13008 reads, 703.0 reads per million, 7 experiments

UAGGUAGUUUCAUGUUGUUGGGguccauuucuaacuCUGCAACAUGAAACUGUCUUAA
((((((((((((((((((.(((............))).)))))))))))))).)))).

Structure

-    -              U   gucca 
 UAGG UAGUUUCAUGUUGU GGG     u
 |||| |||||||||||||| |||      
 AUUC GUCAAAGUACAACG Cuc     u
A    U              U   aaucu 

Annotation confidence Not enough data

Genome context

JH422285.1: 1378219-1378276 [+]

Mature nbr-miR-196a-5p

• Accession: MIMAT0042550
• Description: Neolamprologus brichardi nbr-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-196a-1-3p

• Accession: MIMAT0060217
• Description: Neolamprologus brichardi nbr-miR-196a-1-3p mature miRNA
• Sequence: 37 - CUGCAACAUGAAACUGUCUUAA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381