Stem-loop nbr-mir-122

Accession

MI0034406

Description

Neolamprologus brichardi nbr-mir-122 precursor miRNA

Sequence

183907 reads, 10462.0 reads per million, 7 experiments

UGGAGUGUGACAAUGGUGUUUGuuuccucuucgucaAACGCCAUUAUCACACUAAAU
...(((((((.(((((((((((............))))))))))).)))))))....

Structure

-UGG       C           uuucc 
    AGUGUGA AAUGGUGUUUG     u
    ||||||| |||||||||||      
    UCACACU UUACCGCAAac     c
UAAA       A           ugcuu 

Annotation confidence High

Genome context

JH422287.1: 9116792-9116848 [+]

Mature nbr-miR-122-5p

• Accession: MIMAT0042551
• Description: Neolamprologus brichardi nbr-miR-122-5p mature miRNA
• Sequence: 1 - UGGAGUGUGACAAUGGUGUUUG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-122-3p

• Accession: MIMAT0060188
• Description: Neolamprologus brichardi nbr-miR-122-3p mature miRNA
• Sequence: 37 - AACGCCAUUAUCACACUAAAU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381