miRBase entry: nbr-mir-20b

Stem-loop nbr-mir-20b

Accession

MI0034415

Description

Neolamprologus brichardi nbr-mir-20b precursor miRNA

Sequence

CAAAGUGCUCACAGUGCAGGUAguaaacgcucaucuacugcaguuugugcacuugaggu
..((((((.((.(.(((((.(((...........)))))))).).)).)))))).....

Structure

---CA      U  C G     G   uaaa 
     AAGUGC CA A UGCAG UAg    c
     |||||| || | ||||| |||    g
     uucacg gu u acguc auc    c
uggag      u  u g     -   uacu

Annotation confidence Not enough data

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Genome context

JH422275.1: 13784286-13784344 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-20b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-20b

Accession	MIMAT0042558
Description	Neolamprologus brichardi nbr-miR-20b mature miRNA
Sequence	1 - CAAAGUGCUCACAGUGCAGGUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381