Stem-loop nbr-mir-20b

Accession

MI0034415

Description

Neolamprologus brichardi nbr-mir-20b precursor miRNA

Sequence

8546 reads, 508.0 reads per million, 7 experiments

CAAAGUGCUCACAGUGCAGGUAguaaacgcucaucuACUGCAGUUUGUGCACUUGAGGU
..((((((.((.(.(((((.(((...........)))))))).).)).)))))).....

Structure

---CA      U  C G     G   uaaa 
     AAGUGC CA A UGCAG UAg    c
     |||||| || | ||||| |||    g
     UUCACG GU U ACGUC Auc    c
UGGAG      U  U G     -   uacu 

Annotation confidence High

Genome context

JH422275.1: 13784286-13784344 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-20b

Mature nbr-miR-20b-5p

• Accession: MIMAT0042558
• Description: Neolamprologus brichardi nbr-miR-20b-5p mature miRNA
• Sequence: 1 - CAAAGUGCUCACAGUGCAGGUA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-20b-3p

• Accession: MIMAT0060193
• Description: Neolamprologus brichardi nbr-miR-20b-3p mature miRNA
• Sequence: 37 - ACUGCAGUUUGUGCACUUGAGGU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381