miRBase entry: nbr-mir-24a-2

Stem-loop nbr-mir-24a-2


Accession
MI0034416
Description
Neolamprologus brichardi nbr-mir-24a-2 precursor miRNA


Sequence

14957 reads, 843.0 reads per million, 7 experiments
UGCCUGCUGUGCUGAUAAUCAGUgugugacgucggcUGGCUCAGUUCAGCAGGAACAG
..(((((((.(((((...(((((...........))))).))))).))))))).....

Structure
---UG       U     UAA     gugu 
     CCUGCUG GCUGA   UCAGU    g
     ||||||| |||||   |||||    a
     GGACGAC UGACU   GGUcg    c
GACAA       U     --C     gcug 


Annotation confidence High
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Genome context
JH422293.1: 5860269-5860326 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-24a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-24a-2-5p

Accession MIMAT0060194
Description Neolamprologus brichardi nbr-miR-24a-2-5p mature miRNA
Sequence 1 - UGCCUGCUGUGCUGAUAAUCAGU - 23
Evidence experimental
Illumina [1]

Mature nbr-miR-24a-3p

Accession MIMAT0042559
Description Neolamprologus brichardi nbr-miR-24a-3p mature miRNA
Sequence 37 - UGGCUCAGUUCAGCAGGAACAG - 58
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381