Stem-loop nbr-mir-139

Accession

MI0034418

Description

Neolamprologus brichardi nbr-mir-139 precursor miRNA

Sequence

8015 reads, 424.0 reads per million, 7 experiments

UCUACAGUGCAUGUGUCUCCAGUauguuagugaugcuacUGGAGACCCAGCUCUGUUGGAAU
(((((((.((.((.((((((((((.((.......)))))))))))).)))).))).))))..

Structure

--    -   U  A  U          u  ua 
  UCUA CAG GC UG GUCUCCAGUa gu  g
  |||| ||| || || |||||||||| ||  u
  AGGU GUC CG AC CAGAGGUcau cg  g
UA    U   U  -  C          -  ua 

Annotation confidence High

Genome context

JH422340.1: 3224713-3224774 [-]

Mature nbr-miR-139-5p

• Accession: MIMAT0042560
• Description: Neolamprologus brichardi nbr-miR-139-5p mature miRNA
• Sequence: 1 - UCUACAGUGCAUGUGUCUCCAGU - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-139-3p

• Accession: MIMAT0060196
• Description: Neolamprologus brichardi nbr-miR-139-3p mature miRNA
• Sequence: 40 - UGGAGACCCAGCUCUGUUGGAAU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381