Stem-loop nbr-mir-727

Accession

MI0034424

Description

Neolamprologus brichardi nbr-mir-727 precursor miRNA

Literature search

1 open access papers mention nbr-mir-727
(2 sentences)

Sequence

1186 reads, 68.0 reads per million, 7 experiments

UCAGUCUUCAAUUCCUCCCAGCccauuacuauggaaacugugagUUGAGGCGAGUUGAAGACUAAA
..(((((((((((((((.(((.((((....))))...))).))).......))))))))))))...

Structure

-UC            -------   C   --C    u 
   AGUCUUCAAUUC       CUC CAG   ccau a
   ||||||||||||       ||| |||   ||||  
   UCAGAAGUUGAG       gag guc   ggua c
AAA            CGGAGUU   u   aaa    u 

Annotation confidence Medium

Genome context

JH422283.1: 10359892-10359957 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-727

Mature nbr-miR-727-5p

• Accession: MIMAT0042566
• Description: Neolamprologus brichardi nbr-miR-727-5p mature miRNA
• Sequence: 1 - UCAGUCUUCAAUUCCUCCCAGC - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-727-3p

• Accession: MIMAT0060202
• Description: Neolamprologus brichardi nbr-miR-727-3p mature miRNA
• Sequence: 45 - UUGAGGCGAGUUGAAGACUAAA - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381