Stem-loop nbr-mir-365

Accession

MI0034426

Description

Neolamprologus brichardi nbr-mir-365 precursor miRNA

Sequence

1284 reads, 70.0 reads per million, 7 experiments

AGGGACUUUUAGGGGCAGCUGUGuuuuauuaacccagucaUAAUGCCCCUAAAAAUCCUUAU
(((((.(((((((((((((((.(((.....))).)))).....))))))))))).)))))..

Structure

--     C           -----    U   u 
  AGGGA UUUUAGGGGCA     GCUG Guu u
  ||||| |||||||||||     |||| ||| a
  UUCCU AAAAUCCCCGU     ugac caa u
UA     A           AAUac    c   u 

Annotation confidence High

Genome context

JH422284.1: 8294389-8294450 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-365

Mature nbr-miR-365-5p

• Accession: MIMAT0060203
• Description: Neolamprologus brichardi nbr-miR-365-5p mature miRNA
• Sequence: 1 - AGGGACUUUUAGGGGCAGCUGUG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-365-3p

• Accession: MIMAT0042568
• Description: Neolamprologus brichardi nbr-miR-365-3p mature miRNA
• Sequence: 41 - UAAUGCCCCUAAAAAUCCUUAU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381