Stem-loop nbr-mir-33b

Accession

MI0034430

Description

Neolamprologus brichardi nbr-mir-33b precursor miRNA

Sequence

461 reads, 25.0 reads per million, 7 experiments

GUGCAUUGUAGUUGCAUUGCAUGugugucucagcugagugCAAUGUACCUGCAGUGCAACA
.((((((((((.((((((((((..((......))...)))))))))).))))))))))...

Structure

--G          U          -Gu  gu 
   UGCAUUGUAG UGCAUUGCAU   gu  c
   |||||||||| ||||||||||   ||   
   ACGUGACGUC AUGUAACgug   cg  u
ACA          C          agu  ac 

Annotation confidence Medium

Genome context

JH422293.1: 4738177-4738237 [+]

Mature nbr-miR-33b-5p

• Accession: MIMAT0060207
• Description: Neolamprologus brichardi nbr-miR-33b-5p mature miRNA
• Sequence: 1 - GUGCAUUGUAGUUGCAUUGCAUG - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-33b-3p

• Accession: MIMAT0042572
• Description: Neolamprologus brichardi nbr-miR-33b-3p mature miRNA
• Sequence: 41 - CAAUGUACCUGCAGUGCAACA - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381