miRBase entry: nbr-mir-193

Stem-loop nbr-mir-193


Accession
MI0034431
Description
Neolamprologus brichardi nbr-mir-193 precursor miRNA


Sequence

471 reads, 28.0 reads per million, 7 experiments
ugggucuuugcgggcaaggugaguccucauuucauucAACUGGCCUACAAAGUCCCAGU
((((.(((((.((((.((.(((((.........))))).)).)))).))))).))))..

Structure
--    u     c    a  g     ccu 
  uggg cuuug gggc ag ugagu   c
  |||| ||||| |||| || |||||   a
  ACCC GAAAC UCCG UC Acuua   u
UG    U     A    G  A     cuu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
JH422284.1: 8296970-8297028 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from nbr-mir-193
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-193-3p

Accession MIMAT0042573
Description Neolamprologus brichardi nbr-miR-193-3p mature miRNA
Sequence 38 - AACUGGCCUACAAAGUCCCAGU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381