Stem-loop nbr-mir-23a-1

Accession

MI0034434

Description

Neolamprologus brichardi nbr-mir-23a-1 precursor miRNA

Sequence

3781 reads, 218.0 reads per million, 7 experiments

GGAAUUCCUGGCAGAGUGAUUUuuuuuaaacuagaggacugaAUCACAUUGCCAGGGAUUUCCA
((((((((((((((.((((((((((((......)))))..))))))).))))))))))))))..

Structure

--              A       --     aa 
  GGAAUUCCUGGCAG GUGAUUU  uuuuu  a
  |||||||||||||| |||||||  |||||   
  CUUUAGGGACCGUU CACUAag  aggag  c
AC              A       uc     au 

Annotation confidence High

Genome context

JH422293.1: 5861874-5861937 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-23a-1

Mature nbr-miR-23a-1-5p

• Accession: MIMAT0060208
• Description: Neolamprologus brichardi nbr-miR-23a-1-5p mature miRNA
• Sequence: 1 - GGAAUUCCUGGCAGAGUGAUUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-23a-3p

• Accession: MIMAT0042542
• Description: Neolamprologus brichardi nbr-miR-23a-3p mature miRNA
• Sequence: 43 - AUCACAUUGCCAGGGAUUUCCA - 64
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381