Stem-loop nbr-mir-301b-1

Accession

MI0034437

Description

Neolamprologus brichardi nbr-mir-301b-1 precursor miRNA

Sequence

3142 reads, 196.0 reads per million, 7 experiments

GCUUUGACGAUGUUGCACUACUguaucaucgcugaagCAGUGCAAUAGUAUUGUCAUAGC
(((.(((((((((((((((...((.(((....))).))))))))))...))))))).)))

Structure

   U       ---        ACU  a   u 
GCU UGACGAU   GUUGCACU   gu uca c
||| |||||||   ||||||||   || |||  
CGA ACUGUUA   UAACGUGA   Cg agu g
   U       UGA        ---  a   c 

Annotation confidence High

Genome context

JH422323.1: 4212538-4212597 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-301b-1

Mature nbr-miR-301b-1-5p

• Accession: MIMAT0060138
• Description: Neolamprologus brichardi nbr-miR-301b-1-5p mature miRNA
• Sequence: 1 - GCUUUGACGAUGUUGCACUACU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-301b-3p

• Accession: MIMAT0042504
• Description: Neolamprologus brichardi nbr-miR-301b-3p mature miRNA
• Sequence: 38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381