miRBase entry: nbr-mir-301b-1

Stem-loop nbr-mir-301b-1

Accession

MI0034437

Description

Neolamprologus brichardi nbr-mir-301b-1 precursor miRNA

Sequence

gcuuugacgauguugcacuacuguaucaucgcugaagCAGUGCAAUAGUAUUGUCAUAGC
(((.(((((((((((((((...((.(((....))).))))))))))...))))))).)))

Structure

   u       ---        acu  a   u 
gcu ugacgau   guugcacu   gu uca c
||| |||||||   ||||||||   || |||  
CGA ACUGUUA   UAACGUGA   Cg agu g
   U       UGA        ---  a   c

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH422323.1: 4212538-4212597 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-301b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-301b

Accession	MIMAT0042504
Description	Neolamprologus brichardi nbr-miR-301b mature miRNA
Sequence	38 - CAGUGCAAUAGUAUUGUCAUAGC - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381