Stem-loop nbr-mir-196a-2

Accession

MI0034443

Description

Neolamprologus brichardi nbr-mir-196a-2 precursor miRNA

Sequence

13153 reads, 712.0 reads per million, 7 experiments

UAGGUAGUUUCAUGUUGUUGGGguuggcuuccUGGCUCGGCAACAAGAAACUGCcuuga
.((((((((((.((((((((((.(.((...)).).)))))))))).))))))))))...

Structure

--U          A          g u  c 
   AGGUAGUUUC UGUUGUUGGG u gg  
   |||||||||| |||||||||| | || u
   ucCGUCAAAG ACAACGGCUC G cc  
agu          A          G U  u 

Annotation confidence Medium

Genome context

JH422281.1: 11689067-11689125 [+]

Mature nbr-miR-196a-5p

• Accession: MIMAT0042550
• Description: Neolamprologus brichardi nbr-miR-196a-5p mature miRNA
• Sequence: 1 - UAGGUAGUUUCAUGUUGUUGGG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-196a-2-3p

• Accession: MIMAT0060216
• Description: Neolamprologus brichardi nbr-miR-196a-2-3p mature miRNA
• Sequence: 33 - UGGCUCGGCAACAAGAAACUGC - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381