miRBase entry: nbr-mir-16a

Stem-loop nbr-mir-16a

Accession

MI0034445

Description

Neolamprologus brichardi nbr-mir-16a precursor miRNA

Sequence

UAGCAGCACGUAAAUAUUGGCgugugagaauagaccccaaccccaauauuagcagugcugcuuc
.((((((((((.((((((((.((.((.(........))))).)))))))).)).))))))))..

Structure

-U        -  A        C  g  a aau 
  AGCAGCAC GU AAUAUUGG gu ug g   a
  |||||||| || |||||||| || || |    
  ucgucgug cg uuauaacc ca ac c   g
cu        a  a        c  -  - cca

Annotation confidence Not enough data

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Genome context

JH422310.1: 1071533-1071596 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-16a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-16a

Accession	MIMAT0042578
Description	Neolamprologus brichardi nbr-miR-16a mature miRNA
Sequence	1 - UAGCAGCACGUAAAUAUUGGC - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381