miRBase entry: nbr-mir-19b-2

Stem-loop nbr-mir-19b-2


Accession
MI0034451
Description
Neolamprologus brichardi nbr-mir-19b-2 precursor miRNA


Sequence

5073 reads, 332.0 reads per million, 7 experiments
uAGUUUUGCUGGUUUGCUUUCAGCuuuuaaauguacugcUGUGCAAAUCCAUGCAAAACUG
(((((((((((((((((...((((.............)))).))))).))).)))))))))

Structure
         -   -     UUU    uuuua 
uAGUUUUGC UGG UUUGC   CAGC     a
||||||||| ||| |||||   ||||     a
GUCAAAACG ACC AAACG   GUcg     u
         U   U     --U    ucaug 


Annotation confidence High
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Genome context
JH422286.1: 6064610-6064670 [+]
Clustered miRNAs
5 other miRNAs are < 10 kb from nbr-mir-19b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-19b-2-5p

Accession MIMAT0060218
Description Neolamprologus brichardi nbr-miR-19b-2-5p mature miRNA
Sequence 2 - AGUUUUGCUGGUUUGCUUUCAGC - 24
Evidence experimental
Illumina [1]

Mature nbr-miR-19b-3p

Accession MIMAT0042503
Description Neolamprologus brichardi nbr-miR-19b-3p mature miRNA
Sequence 40 - UGUGCAAAUCCAUGCAAAACUG - 61
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381