miRBase entry: nbr-mir-199-5

Stem-loop nbr-mir-199-5

Accession

MI0034463

Description

Neolamprologus brichardi nbr-mir-199-5 precursor miRNA

Sequence

ACAGUAGUCUGCACAUUGGUUagacugugcaaggaagugcaucagcagcuuauacuaaugccaucuacaaauac
...((((..((..(((((((.((.(((((((......)))).)))...))...))))))).)).))))......

Structure

---ACA    UC  CA       --U  --a   -    ag 
      GUAG  UG  CAUUGGU   ag   cug ugca  g
      ||||  ||  |||||||   ||   ||| ||||   
      cauc  ac  guaauca   uc   gac acgu  a
cauaaa    -u  -c       uau  gac   u    ga

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH422290.1: 764684-764757 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-199-5

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-199

Accession	MIMAT0042474
Description	Neolamprologus brichardi nbr-miR-199 mature miRNA
Sequence	1 - ACAGUAGUCUGCACAUUGGUU - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381