Stem-loop nbr-mir-29b

Accession

MI0034464

Description

Neolamprologus brichardi nbr-mir-29b precursor miRNA

Literature search

1 open access papers mention nbr-mir-29b
(4 sentences)

Sequence

69 reads, 4.0 reads per million, 7 experiments

aGCUGGUUUCAGAUGGUGGCUUAGAguauugucaucuaucUAGCACCAUUUGAAAUCAGUGUU
.(((((((((((((((((.((((((.........))))...)))))))))))))))))))...

Structure

--a                 G  ---    gua 
   GCUGGUUUCAGAUGGUG CU   UAGA   u
   ||||||||||||||||| ||   ||||   u
   UGACUAAAGUUUACCAC GA   aucu   g
UUG                 -  Ucu    acu 

Annotation confidence High

Genome context

JH422304.1: 2584042-2584104 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-29b

Mature nbr-miR-29b-5p

• Accession: MIMAT0060221
• Description: Neolamprologus brichardi nbr-miR-29b-5p mature miRNA
• Sequence: 2 - GCUGGUUUCAGAUGGUGGCUUAGA - 25
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-29b-3p

• Accession: MIMAT0042585
• Description: Neolamprologus brichardi nbr-miR-29b-3p mature miRNA
• Sequence: 41 - UAGCACCAUUUGAAAUCAGUGUU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381