Stem-loop nbr-mir-10d

Accession

MI0034465

Description

Neolamprologus brichardi nbr-mir-10d precursor miRNA

Sequence

113673 reads, 6658.0 reads per million, 7 experiments

CACCCUGUAGAUCCGAAUUUGUguaaauacagcagcagccaCAAAUUCGCAUCUUGGGGAGU
..(((((.((((.((((((((((........((....)))))))))))).)))))))))...

Structure

-CA     U    C          uaaauaca  a 
   CCCUG AGAU CGAAUUUGUg        gc g
   ||||| |||| ||||||||||        ||  
   GGGGU UCUA GCUUAAACac        cg c
UGA     -    C          --------  a 

Annotation confidence High

Genome context

JH422300.1: 1572414-1572475 [-]

Mature nbr-miR-10d-5p

• Accession: MIMAT0042586
• Description: Neolamprologus brichardi nbr-miR-10d-5p mature miRNA
• Sequence: 1 - CACCCUGUAGAUCCGAAUUUGU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-10d-3p

• Accession: MIMAT0060222
• Description: Neolamprologus brichardi nbr-miR-10d-3p mature miRNA
• Sequence: 42 - CAAAUUCGCAUCUUGGGGAGU - 62
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381