Stem-loop nbr-mir-132b

Accession

MI0034467

Description

Neolamprologus brichardi nbr-mir-132b precursor miRNA

Literature search

1 open access papers mention nbr-mir-132b
(1 sentences)

Sequence

1692 reads, 99.0 reads per million, 7 experiments

ACCGUGGCUUUAGAUUGUUACUcuagcaacagcaccauggUAACAGUCUACAGCCAUGGUC
(((((((((.((((((((((((...((....)).....)))))))))))).))))))))).

Structure

-         U            --cua  a 
 ACCGUGGCU UAGAUUGUUACU     gc a
 ||||||||| ||||||||||||     ||  
 UGGUACCGA AUCUGACAAUgg     cg c
C         C            uacca  a 

Annotation confidence High

Genome context

JH422512.1: 165486-165546 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-132b

Mature nbr-miR-132b-5p

• Accession: MIMAT0042588
• Description: Neolamprologus brichardi nbr-miR-132b-5p mature miRNA
• Sequence: 1 - ACCGUGGCUUUAGAUUGUUACU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-132b-3p

• Accession: MIMAT0060223
• Description: Neolamprologus brichardi nbr-miR-132b-3p mature miRNA
• Sequence: 41 - UAACAGUCUACAGCCAUGGUC - 61
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381