Stem-loop nbr-mir-196b

Accession

MI0034471

Description

Neolamprologus brichardi nbr-mir-196b precursor miRNA

Sequence

10420 reads, 571.0 reads per million, 7 experiments

UAGGUAGUCUCAUGUUGUUGGGCuauauuauuucucCCACAACACAAAACUGCCUUGA
.(((((((....((((((.(((.............)))))))))....)))))))...

Structure

--U       CUCA      U   Cuaua 
   AGGUAGU    UGUUGU GGG     u
   |||||||    |||||| |||     u
   UCCGUCA    ACAACA CCc     a
AGU       AAAC      -   ucuuu 

Annotation confidence High

Genome context

JH422352.1: 1725907-1725964 [-]

Mature nbr-miR-196b-5p

• Accession: MIMAT0042592
• Description: Neolamprologus brichardi nbr-miR-196b-5p mature miRNA
• Sequence: 1 - UAGGUAGUCUCAUGUUGUUGGGC - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-196b-3p

• Accession: MIMAT0060226
• Description: Neolamprologus brichardi nbr-miR-196b-3p mature miRNA
• Sequence: 37 - CCACAACACAAAACUGCCUUGA - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381