miRBase entry: nbr-mir-24b

Stem-loop nbr-mir-24b


Accession
MI0034472
Description
Neolamprologus brichardi nbr-mir-24b precursor miRNA


Sequence

14842 reads, 837.0 reads per million, 7 experiments
UGCCUACUGAACUGGUAUCAGUguuacaccugaaaacUGGCUCAGUUCAGCAGGAACAG
..(((.(((((((((..(((((.............))))).))))))))).))).....

Structure
---UG   A         UA     guuac 
     CCU CUGAACUGG  UCAGU     a
     ||| |||||||||  |||||     c
     GGA GACUUGACU  GGUca     c
GACAA   C         -C     aaagu 


Annotation confidence High
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Genome context
JH422373.1: 1151941-1151999 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nbr-mir-24b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-24b-5p

Accession MIMAT0042593
Description Neolamprologus brichardi nbr-miR-24b-5p mature miRNA
Sequence 1 - UGCCUACUGAACUGGUAUCAGU - 22
Evidence experimental
Illumina [1]

Mature nbr-miR-24b-3p

Accession MIMAT0060227
Description Neolamprologus brichardi nbr-miR-24b-3p mature miRNA
Sequence 38 - UGGCUCAGUUCAGCAGGAACAG - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381