Stem-loop nbr-mir-216a

Accession

MI0034476

Description

Neolamprologus brichardi nbr-mir-216a precursor miRNA

Sequence

6551 reads, 377.0 reads per million, 7 experiments

AAAUCUCAGCUGGCAACUGUGAgucguucacuagcugcucuCACAAUGGCCUCUGGGAUUAUG
.((((((((..(((...((((((..((.........)).))))))...))).))))))))...

Structure

--A        CU   AAC      uc  uca 
   AAUCUCAG  GGC   UGUGAg  gu   c
   ||||||||  |||   ||||||  ||   u
   UUAGGGUC  CCG   ACACuc  cg   a
GUA        -U   GUA      -u  ucg 

Annotation confidence High

Genome context

JH422278.1: 13972675-13972737 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-216a

Mature nbr-miR-216a-5p

• Accession: MIMAT0042596
• Description: Neolamprologus brichardi nbr-miR-216a-5p mature miRNA
• Sequence: 1 - AAAUCUCAGCUGGCAACUGUGA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-216a-3p

• Accession: MIMAT0060230
• Description: Neolamprologus brichardi nbr-miR-216a-3p mature miRNA
• Sequence: 42 - CACAAUGGCCUCUGGGAUUAUG - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381