Stem-loop nbr-mir-23c

Accession

MI0034477

Description

Neolamprologus brichardi nbr-mir-23c precursor miRNA

Sequence

1513 reads, 107.0 reads per million, 7 experiments

UGUGUCUCUGGCAAGAUGAUUUgggccacaaaguugaaAUCACAUUGCCAGAGAUUACUG
.(((((((((((((..((((((.(((......))).))))))..)))))))))).)))..

Structure

-U   -          GA      g   ca 
  GUG UCUCUGGCAA  UGAUUU ggc  c
  ||| ||||||||||  |||||| |||   
  CAU AGAGACCGUU  ACUAaa uug  a
GU   U          AC      g   aa 

Annotation confidence High

Genome context

JH422376.1: 819474-819533 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-23c

Mature nbr-miR-23c-5p

• Accession: MIMAT0060231
• Description: Neolamprologus brichardi nbr-miR-23c-5p mature miRNA
• Sequence: 1 - UGUGUCUCUGGCAAGAUGAUUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-23c-3p

• Accession: MIMAT0042597
• Description: Neolamprologus brichardi nbr-miR-23c-3p mature miRNA
• Sequence: 39 - AUCACAUUGCCAGAGAUUACUG - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381