Stem-loop nbr-mir-135d

Accession

MI0034481

Description

Neolamprologus brichardi nbr-mir-135d precursor miRNA

Sequence

3025 reads, 189.0 reads per million, 7 experiments

UAUGGCUUUUUAUUCCUACGUGAugguagauggguucAUGUAGGAGUAGAAGCCACU
..((((((((.((((((((((((............))))))))))))))))))))..

Structure

UA        U            uggua 
  UGGCUUUU AUUCCUACGUGA     g
  |||||||| ||||||||||||      
  ACCGAAGA UGAGGAUGUAcu     a
UC        -            ugggu 

Annotation confidence Medium

Genome context

JH422274.1: 6104193-6104249 [+]

Mature nbr-miR-135d-5p

• Accession: MIMAT0042600
• Description: Neolamprologus brichardi nbr-miR-135d-5p mature miRNA
• Sequence: 1 - UAUGGCUUUUUAUUCCUACGUGA - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-135d-3p

• Accession: MIMAT0060233
• Description: Neolamprologus brichardi nbr-miR-135d-3p mature miRNA
• Sequence: 38 - AUGUAGGAGUAGAAGCCACU - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381