miRBase entry: nbr-mir-19c

Stem-loop nbr-mir-19c


Accession
MI0034483
Description
Neolamprologus brichardi nbr-mir-19c precursor miRNA


Sequence

4355 reads, 263.0 reads per million, 7 experiments
AGUUUUGAUGGUUUGCUCUCAGCuucugaaagacucugcUGUGCAAAUCCAUGCAAAGCUCU
((((((((((((((((...((((..............)))).))))).)))).)))))))..

Structure
--       -    -     UCU    uucuga 
  AGUUUUG AUGG UUUGC   CAGC      a
  ||||||| |||| |||||   ||||       
  UCGAAAC UACC AAACG   GUcg      a
UC       G    U     --U    ucucag 


Annotation confidence High
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Genome context
JH422275.1: 13784402-13784463 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from nbr-mir-19c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature nbr-miR-19c-5p

Accession MIMAT0060234
Description Neolamprologus brichardi nbr-miR-19c-5p mature miRNA
Sequence 1 - AGUUUUGAUGGUUUGCUCUCAGC - 23
Evidence experimental
Illumina [1]

Mature nbr-miR-19c-3p

Accession MIMAT0042602
Description Neolamprologus brichardi nbr-miR-19c-3p mature miRNA
Sequence 40 - UGUGCAAAUCCAUGCAAAGCUCU - 62
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 25186727
    The genomic substrate for adaptive radiation in African cichlid fish
    "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
    "Nature (2014) 513:375-381