miRBase entry: nbr-mir-19c

Stem-loop nbr-mir-19c

Accession

MI0034483

Description

Neolamprologus brichardi nbr-mir-19c precursor miRNA

Sequence

aguuuugaugguuugcucucagcuucugaaagacucugcUGUGCAAAUCCAUGCAAAGCUCU
((((((((((((((((...((((..............)))).))))).)))).)))))))..

Structure

--       -    -     ucu    uucuga 
  aguuuug augg uuugc   cagc      a
  ||||||| |||| |||||   ||||       
  UCGAAAC UACC AAACG   GUcg      a
UC       G    U     --U    ucucag

Annotation confidence Not enough data

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Genome context

JH422275.1: 13784402-13784463 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from nbr-mir-19c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-19c

Accession	MIMAT0042602
Description	Neolamprologus brichardi nbr-miR-19c mature miRNA
Sequence	40 - UGUGCAAAUCCAUGCAAAGCUCU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381