Stem-loop nbr-mir-194b

Accession

MI0034484

Description

Neolamprologus brichardi nbr-mir-194b precursor miRNA

Sequence

252 reads, 15.0 reads per million, 7 experiments

UGUAACAGCAUCUCCAUAUGGAaaaacuguggcuuCCAGUGGAGCUGCUGUUAUCUG
.(((((((((.((((((.(((((..........))))))))))).)))))))))...

Structure

--U         U      A     aaac 
   GUAACAGCA CUCCAU UGGAa    u
   ||||||||| |||||| |||||     
   UAUUGUCGU GAGGUG ACCuu    g
GUC         C      -     cggu 

Annotation confidence High

Genome context

JH422275.1: 2912166-2912222 [+]

Mature nbr-miR-194b-5p

• Accession: MIMAT0042603
• Description: Neolamprologus brichardi nbr-miR-194b-5p mature miRNA
• Sequence: 1 - UGUAACAGCAUCUCCAUAUGGA - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-194b-3p

• Accession: MIMAT0060235
• Description: Neolamprologus brichardi nbr-miR-194b-3p mature miRNA
• Sequence: 36 - CCAGUGGAGCUGCUGUUAUCUG - 57
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381