Stem-loop nbr-mir-31

Accession

MI0034485

Description

Neolamprologus brichardi nbr-mir-31 precursor miRNA

Sequence

2147 reads, 111.0 reads per million, 7 experiments

AGGCAAGAUGUUGGCAUAGCUGuugaguuaaaaacccUGCUAUGCCGACAAAUUGCCAUC
.(((((..((((((((((((.(((........)))...))))))))))))..)))))...

Structure

--A     GA            --U   gag 
   GGCAA  UGUUGGCAUAGC   Guu   u
   |||||  ||||||||||||   |||    
   CCGUU  ACAGCCGUAUCG   caa   u
CUA     AA            Ucc   aaa 

Annotation confidence High

Genome context

JH422364.1: 2327009-2327068 [+]

Mature nbr-miR-31-5p

• Accession: MIMAT0042604
• Description: Neolamprologus brichardi nbr-miR-31-5p mature miRNA
• Sequence: 1 - AGGCAAGAUGUUGGCAUAGCUG - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-31-3p

• Accession: MIMAT0060236
• Description: Neolamprologus brichardi nbr-miR-31-3p mature miRNA
• Sequence: 38 - UGCUAUGCCGACAAAUUGCCAUC - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381