Stem-loop nbr-mir-551

Accession

MI0034489

Description

Neolamprologus brichardi nbr-mir-551 precursor miRNA

Sequence

3294 reads, 201.0 reads per million, 7 experiments

GAAACCAAGUGUGGGUGUGGCCUgaaaaagaaauaugGCGACCCAUCCUUUGUUUCUG
(((((.(((.((((((...(((..............))).)))))).))).)))))..

Structure

--     C   U      GUG   Ugaaaa 
  GAAAC AAG GUGGGU   GCC      a
  ||||| ||| ||||||   |||       
  CUUUG UUC UACCCA   CGg      g
GU     U   C      --G   uauaaa 

Annotation confidence High

Genome context

JH422340.1: 2414659-2414716 [-]

Mature nbr-miR-551-5p

• Accession: MIMAT0060238
• Description: Neolamprologus brichardi nbr-miR-551-5p mature miRNA
• Sequence: 1 - GAAACCAAGUGUGGGUGUGGCCU - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-551-3p

• Accession: MIMAT0042609
• Description: Neolamprologus brichardi nbr-miR-551-3p mature miRNA
• Sequence: 38 - GCGACCCAUCCUUUGUUUCUG - 58
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381