miRBase entry: nbr-mir-15b

Stem-loop nbr-mir-15b

Accession

MI0034496

Description

Neolamprologus brichardi nbr-mir-15b precursor miRNA

Sequence

UAGCAGCGCAUCAUGGUUUGAaacaauguggaaaaggugcgaaccauaauuugcugcuuu
.(((((((.((.((((((((..((..(......)..)).)))))))).)).)))))))..

Structure

-U       C  C        Aa  aa gu 
  AGCAGCG AU AUGGUUUG  ac  u  g
  ||||||| || ||||||||  ||  |   
  ucgucgu ua uaccaagc  ug  a  g
uu       u  a        -g  ga aa

Annotation confidence Not enough data

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Genome context

JH422310.1: 1071306-1071365 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-15b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-15b

Accession	MIMAT0042617
Description	Neolamprologus brichardi nbr-miR-15b mature miRNA
Sequence	1 - UAGCAGCGCAUCAUGGUUUGA - 21
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381