Stem-loop nbr-mir-15b

Accession

MI0034496

Description

Neolamprologus brichardi nbr-mir-15b precursor miRNA

Literature search

1 open access papers mention nbr-mir-15b
(1 sentences)

Sequence

10746 reads, 616.0 reads per million, 7 experiments

UAGCAGCGCAUCAUGGUUUGAaacaauguggaaaaggugCGAACCAUAAUUUGCUGCUUU
.(((((((.((.((((((((..((..(......)..)).)))))))).)).)))))))..

Structure

-U       C  C        Aa  aa gu 
  AGCAGCG AU AUGGUUUG  ac  u  g
  ||||||| || ||||||||  ||  |   
  UCGUCGU UA UACCAAGC  ug  a  g
UU       U  A        -g  ga aa 

Annotation confidence High

Genome context

JH422310.1: 1071306-1071365 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-15b

Mature nbr-miR-15b-5p

• Accession: MIMAT0042617
• Description: Neolamprologus brichardi nbr-miR-15b-5p mature miRNA
• Sequence: 1 - UAGCAGCGCAUCAUGGUUUGA - 21
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-15b-3p

• Accession: MIMAT0060241
• Description: Neolamprologus brichardi nbr-miR-15b-3p mature miRNA
• Sequence: 40 - CGAACCAUAAUUUGCUGCUUU - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381