Stem-loop nbr-mir-2187b

Accession

MI0034497

Description

Neolamprologus brichardi nbr-mir-2187b precursor miRNA

Sequence

131 reads, 8.0 reads per million, 7 experiments

UUUAAUUAGUACAGCCUGUAUUaguaaugucaucuauucUUUACAGGCUAUGCUAAUCUaugc
....(((((((.((((((((..((.((((.....)))))).)))))))).)))))))......

Structure

--UUUA       C        UU  u    u 
      AUUAGUA AGCCUGUA  ag aaug c
      ||||||| ||||||||  || |||| a
      UAAUCGU UCGGACAU  Uc uuau u
cguaUC       A        -U  -    c 

Annotation confidence Medium

Genome context

JH422354.1: 1784031-1784093 [+]

Mature nbr-miR-2187b-5p

• Accession: MIMAT0042618
• Description: Neolamprologus brichardi nbr-miR-2187b-5p mature miRNA
• Sequence: 1 - UUUAAUUAGUACAGCCUGUAUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-2187b-3p

• Accession: MIMAT0060242
• Description: Neolamprologus brichardi nbr-miR-2187b-3p mature miRNA
• Sequence: 40 - UUUACAGGCUAUGCUAAUCU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381