Stem-loop nbr-mir-212a

Accession

MI0034498

Description

Neolamprologus brichardi nbr-mir-212a precursor miRNA

Sequence

1083 reads, 68.0 reads per million, 7 experiments

ACCUUGGCUUUAGACUGCUUACUgcuuauacaguaucaaaguacagUAACAGUCUACAGUCAUGGCU
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure

-A  U     U       C      cuua   agu 
  CC UGGCU UAGACUG UUACUg    uac   a
  || ||||| ||||||| ||||||    |||   u
  GG ACUGA AUCUGAC AAUgac    aug   c
UC  U     C       -      ----   aaa 

Annotation confidence High

Genome context

JH422512.1: 165079-165145 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-212a

Mature nbr-miR-212a-5p

• Accession: MIMAT0042619
• Description: Neolamprologus brichardi nbr-miR-212a-5p mature miRNA
• Sequence: 1 - ACCUUGGCUUUAGACUGCUUACU - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-212a-3p

• Accession: MIMAT0060243
• Description: Neolamprologus brichardi nbr-miR-212a-3p mature miRNA
• Sequence: 47 - UAACAGUCUACAGUCAUGGCU - 67
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381