miRBase entry: nbr-mir-212a

Stem-loop nbr-mir-212a

Accession

MI0034498

Description

Neolamprologus brichardi nbr-mir-212a precursor miRNA

Sequence

ACCUUGGCUUUAGACUGCUUACUgcuuauacaguaucaaaguacaguaacagucuacagucauggcu
.((.(((((.(((((((.((((((....(((.........)))))))))))))))).))))).))..

Structure

-A  U     U       C      cuua   agu 
  CC UGGCU UAGACUG UUACUg    uac   a
  || ||||| ||||||| ||||||    |||   u
  gg acuga aucugac aaugac    aug   c
uc  u     c       -      ----   aaa

Annotation confidence Not enough data

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Genome context

JH422512.1: 165079-165145 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-212a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-212a

Accession	MIMAT0042619
Description	Neolamprologus brichardi nbr-miR-212a mature miRNA
Sequence	1 - ACCUUGGCUUUAGACUGCUUACU - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381