Stem-loop nbr-mir-219a

Accession

MI0034500

Description

Neolamprologus brichardi nbr-mir-219a precursor miRNA

Sequence

15855 reads, 925.0 reads per million, 7 experiments

UGAUUGUCCAAACGCAAUUCUUgugaaauuucaaauccaacccgAGAAUUGUGCCUGGACAUCUGU
.(((.(((((..((((((((((((((....))).........)))))))))))..))))))))...

Structure

--U   U     AA           ---------   a 
   GAU GUCCA  CGCAAUUCUUg         uga a
   ||| |||||  |||||||||||         |||  
   CUA CAGGU  GUGUUAAGAgc         acu u
UGU   -     CC           ccaaccuaa   u 

Annotation confidence High

Genome context

JH422325.1: 1104741-1104806 [+]

Mature nbr-miR-219a-5p

• Accession: MIMAT0060245
• Description: Neolamprologus brichardi nbr-miR-219a-5p mature miRNA
• Sequence: 1 - UGAUUGUCCAAACGCAAUUCUU - 22
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-219a-3p

• Accession: MIMAT0042621
• Description: Neolamprologus brichardi nbr-miR-219a-3p mature miRNA
• Sequence: 45 - AGAAUUGUGCCUGGACAUCUGU - 66
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381