Stem-loop nbr-mir-33a

Accession

MI0034503

Description

Neolamprologus brichardi nbr-mir-33a precursor miRNA

Literature search

1 open access papers mention nbr-mir-33a
(1 sentences)

Sequence

271 reads, 16.0 reads per million, 7 experiments

gugcauuguaguugcauugcaUGAUCCUGAAGCCGAGUGCAAUGUGUCUGCAGUGCAGUA
.((((((((((..(((((((((..((........)))))))))))..))))))))))...

Structure

--g          uu         GA  CUG 
   ugcauuguag  gcauugcaU  UC   A
   ||||||||||  |||||||||  ||    
   ACGUGACGUC  UGUAACGUG  AG   A
AUG          UG         --  CCG 

Annotation confidence Medium

Genome context

JH422327.1: 977468-977527 [-]

Mature nbr-miR-33a-5p

• Accession: MIMAT0061611
• Description: Neolamprologus brichardi nbr-miR-33a-5p mature miRNA
• Sequence: 22 - UGAUCCUGAAGCCGAGUG - 39
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-33a-3p

• Accession: MIMAT0042625
• Description: Neolamprologus brichardi nbr-miR-33a-3p mature miRNA
• Sequence: 40 - CAAUGUGUCUGCAGUGCAGUA - 60
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381