miRBase entry: nbr-mir-449a

Stem-loop nbr-mir-449a

Accession

MI0034511

Description

Neolamprologus brichardi nbr-mir-449a precursor miRNA

Sequence

AGGCAGUGUCUUGUUAGCUGGUaguuucuuccugugccagcucaccugcugcugcccuc
.(((((((.(..((.((((((((...........)))))))).))..).)))))))...

Structure

--A       U UU  U        guuu 
   GGCAGUG C  GU AGCUGGUa    c
   ||||||| |  || ||||||||    u
   ccgucgu g  ca ucgaccgu    u
cuc       c uc  c        gucc

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH422289.1: 7633262-7633320 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from nbr-mir-449a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-449a

Accession	MIMAT0042635
Description	Neolamprologus brichardi nbr-miR-449a mature miRNA
Sequence	1 - AGGCAGUGUCUUGUUAGCUGGU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381