Stem-loop nbr-mir-10544

Accession

MI0034513

Description

Neolamprologus brichardi nbr-mir-10544 precursor miRNA

Literature search

1 open access papers mention nbr-mir-10544
(1 sentences)

Sequence

176 reads, 11.0 reads per million, 7 experiments

UAGGCGUGUCACUGCGUGUCACAgucacugcuUGCGCACGGGGCCACGCCCUGC
..((((((...((.(((((((.(((....))))).))))).)).))))))....

Structure

--UA      UCA  G     -  C   c 
    GGCGUG   CU CGUGU CA Agu a
    ||||||   || ||||| || |||  
    CCGCAC   GG GCACG GU ucg c
CGUC      --C  G     C  -   u 

Annotation confidence High

Genome context

JH422363.1: 648407-648460 [+]

Mature nbr-miR-10544-5p

• Accession: MIMAT0042637
• Description: Neolamprologus brichardi nbr-miR-10544-5p mature miRNA
• Sequence: 1 - UAGGCGUGUCACUGCGUGUCACA - 23
• Evidence: experimental ; Illumina [1]

Mature nbr-miR-10544-3p

• Accession: MIMAT0060251
• Description: Neolamprologus brichardi nbr-miR-10544-3p mature miRNA
• Sequence: 33 - UGCGCACGGGGCCACGCCCUGC - 54
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381