Stem-loop oni-mir-192

Accession

MI0034521

Description

Oreochromis niloticus oni-mir-192 precursor miRNA

Literature search

3 open access papers mention oni-mir-192
(7 sentences)

Sequence

16349541 reads, 19347.0 reads per million, 105 experiments

AUGACCUAUGAAUUGACAGCCagugauuuccagccucugCCUGUCAGUUCUGUAGGCCACU
.((.(((((((((((((((.(((.(.........).))).)))))))))).))))).))..

Structure

-A  A     -          C   u auu 
  UG CCUAU GAAUUGACAG Cag g   u
  || ||||| |||||||||| ||| |   c
  AC GGAUG CUUGACUGUC guc c   c
UC  C     U          C   u cga 

Annotation confidence High

Genome context

CM001453.1: 6970813-6970873 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-192

Mature oni-miR-192-5p

• Accession: MIMAT0042644
• Description: Oreochromis niloticus oni-miR-192-5p mature miRNA
• Sequence: 1 - AUGACCUAUGAAUUGACAGCC - 21
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-192-3p

• Accession: MIMAT0059289
• Description: Oreochromis niloticus oni-miR-192-3p mature miRNA
• Sequence: 40 - CCUGUCAGUUCUGUAGGCCACU - 61
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774