Stem-loop oni-mir-143

Accession

MI0034525

Description

Oreochromis niloticus oni-mir-143 precursor miRNA

Literature search

5 open access papers mention oni-mir-143
(30 sentences)

Sequence

17055747 reads, 22543.0 reads per million, 116 experiments

GGUGCAGUGCUGCAUCUCUGGUCaguugguagucUGAGAUGAAGCACUGUAGCUC
(.(((((((((.((((((.((.(........).)))))))).))))))))).)..

Structure

-- G         G      U  U agu 
  G UGCAGUGCU CAUCUC GG C   u
  | ||||||||| |||||| || |    
  C AUGUCACGA GUAGAG Uc g   g
CU G         A      -  u aug 

Annotation confidence High

Genome context

CM001448.1: 32184421-32184475 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-143

Mature oni-miR-143-5p

• Accession: MIMAT0059292
• Description: Oreochromis niloticus oni-miR-143-5p mature miRNA
• Sequence: 1 - GGUGCAGUGCUGCAUCUCUGGUC - 23
• Evidence: experimental ; Illumina [1-2]

Mature oni-miR-143-3p

• Accession: MIMAT0042647
• Description: Oreochromis niloticus oni-miR-143-3p mature miRNA
• Sequence: 35 - UGAGAUGAAGCACUGUAGCUC - 55
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 25186727
   The genomic substrate for adaptive radiation in African cichlid fish
   "Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
   "Nature (2014) 513:375-381


2. PubMed ID: 25199625
   Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
   Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
   BMC Genomics (2014) 15:774